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Bra007932 protein (Brassica rapa) - STRING interaction network
"Bra007932" - AT1G70660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007932AT1G70660 (E=5e-080) MMZ2, UEV1B | MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (159 aa)    
Predicted Functional Partners:
Bra029711
AT3G08690 (E=2e-081) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (310 aa)
     
  0.979
Bra026700
AT1G16890 (E=7e-085) UBC36, UBC13B | ubiquitin-conjugating enzyme, putative (153 aa)
     
  0.973
Bra026018
AT1G16890 (E=2e-085) UBC36, UBC13B | ubiquitin-conjugating enzyme, putative (153 aa)
     
  0.973
Bra016626
AT1G16890 (E=3e-085) UBC36, UBC13B | ubiquitin-conjugating enzyme, putative (153 aa)
     
  0.973
Bra008383
AT1G16890 (E=2e-084) UBC36, UBC13B | ubiquitin-conjugating enzyme, putative (153 aa)
     
  0.973
Bra041101
AT3G08690 (E=8e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (148 aa)
     
  0.973
Bra035606
AT5G56170 (E=2e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- LRE (LORELEI) (TAIR-AT4G26466.1); Has 71 Blast hits to 71 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (299 aa)
     
  0.973
Bra035605
AT5G56150 (E=2e-082) UBC30 | UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase (148 aa)
     
  0.973
Bra035071
AT1G16890 (E=2e-036) UBC36, UBC13B | ubiquitin-conjugating enzyme, putative (139 aa)
     
  0.973
Bra034405
AT1G36340 (E=1e-038) UBC31 | UBC31 (ubiquitin-conjugating enzyme 31); small conjugating protein ligase/ ubiquitin-protein ligase (249 aa)
     
  0.973
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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