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Bra007941 protein (Brassica rapa) - STRING interaction network
"Bra007941" - AT1G70760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007941AT1G70760 (E=2e-090) CRR23 | CRR23 ((chlororespiratory reduction 23) (192 aa)    
Predicted Functional Partners:
Bra005037
AT2G39470 (E=3e-116) PPL2 | PPL2 (PsbP-like protein 2); calcium ion binding (237 aa)
     
   
  0.631
Bra006777
AT5G58260 (E=3e-103) | Encodes subunit NDH-N of NAD(P)H-plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. (208 aa)
     
   
  0.561
Bra035989
AT5G43750 (E=2e-093) | unknown protein (222 aa)
     
 
  0.530
Bra033642
AT1G64770 (E=8e-155) NDF2 | NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); carbohydrate binding / catalytic (352 aa)
     
   
  0.529
Bra026087
AT1G15980 (E=1e-221) NDF1 | NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) (459 aa)
     
   
  0.528
Bra010621
AT4G37925 (E=9e-107) NDH-M | NDH-M (subunit NDH-M of NAD(P)H-plastoquinone dehydrogenase complex) (220 aa)
     
   
  0.508
Bra027180
AT3G16250 (E=6e-092) NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (204 aa)
     
   
  0.492
Bra021172
AT3G16250 (E=2e-104) NDF4 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); electron carrier/ iron-sulfur cluster binding (204 aa)
     
   
  0.492
Bra016522
AT1G19150 (E=2e-129) LHCA6, LHCA2*1 | LHCA6; chlorophyll binding (266 aa)
     
   
  0.488
Bra015886
AT1G74880 (E=2e-047) NDH-O | NDH-O (NAD(P)H-plastoquinone dehydrogenase complex subunit O) (163 aa)
     
   
  0.470
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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