STRINGSTRING
Bra007956 protein (Brassica rapa) - STRING interaction network
"Bra007956" - AT1G23030 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurence
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[Homology]
Score
Bra007956AT1G23030 (E=2e-012) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein (68 aa)    
Predicted Functional Partners:
Bra037564
AT3G18770 (E=1e-213) | LOCATED IN- chloroplast; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species- Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source- NCBI BLink). (590 aa)
       
  0.788
Bra022353
AT3G18770 (E=2e-050) | LOCATED IN- chloroplast; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species- Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source- NCBI BLink). (434 aa)
       
  0.788
Bra019602
AT3G49590 (E=3e-074) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species- Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source- NCBI BLink). (563 aa)
       
  0.788
Bra017973
AT3G49590 (E=6e-032) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species- Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source- NCBI BLink). (317 aa)
       
  0.788
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
     
  0.570
Bra037407
AT4G00840 (E=6e-062) | zinc ion binding (270 aa)
     
 
  0.513
Bra029760
AT3G09320 (E=1e-141) | zinc finger (DHHC type) family protein (286 aa)
     
 
  0.513
Bra019361
AT4G22750 (E=5e-123) | zinc finger (DHHC type) family protein (305 aa)
     
 
  0.513
Bra014469
AT3G60800 (E=8e-109) | zinc finger (DHHC type) family protein (275 aa)
     
 
  0.513
Bra013642
AT4G22750 (E=2e-120) | zinc finger (DHHC type) family protein (301 aa)
     
 
  0.513
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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