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Bra007961 protein (Brassica rapa) - STRING interaction network
"Bra007961" - AT1G71100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007961AT1G71100 (E=5e-118) RSW10 | RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase (259 aa)    
Predicted Functional Partners:
Bra012963
AT5G61410 (E=1e-133) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (282 aa)
   
  0.954
Bra009244
AT5G61410 (E=1e-137) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (275 aa)
   
  0.954
Bra027631
AT3G01850 (E=2e-117) | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (281 aa)
   
  0.947
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
   
  0.944
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
   
  0.944
Bra004898
AT2G45290 (E=0.0) | transketolase, putative (736 aa)
   
  0.944
Bra025996
AT1G17160 (E=3e-144) | pfkB-type carbohydrate kinase family protein (378 aa)
       
  0.906
Bra030486
AT1G50500 (E=0.0) HIT1, ATVPS53, VPS53 | HIT1 (HEAT-INTOLERANT 1); transporter (824 aa)
       
      0.899
Bra016149
AT1G71270 (E=0.0) POK, TTD8, ATVPS52 | POK (POKY POLLEN TUBE) (708 aa)
       
      0.899
Bra037645
AT2G44530 (E=6e-109) | ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative (414 aa)
   
 
  0.897
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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