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Bra007966 protein (Brassica rapa) - STRING interaction network
"Bra007966" - AT1G71160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007966AT1G71160 (E=2e-222) KCS7 | KCS7 (3-KETOACYL-COA SYNTHASE 7); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (449 aa)    
Predicted Functional Partners:
Bra012848
AT3G51590 (E=4e-052) LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12); lipid binding ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (119 aa)
     
   
  0.504
Bra034637
AT4G34550 (E=6e-048) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT2G16365.3); Has 23 Blast hits to 23 proteins in 4 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (308 aa)
           
  0.477
Bra011539
AT4G34500 (E=2e-202) | protein kinase family protein (449 aa)
           
  0.477
Bra009256
AT5G07520 (E=4e-010) GRP18, ATGRP18, ATGRP-8 | GRP18 (GLYCINE-RICH PROTEIN 18); lipid binding / nutrient reservoir (175 aa)
     
   
  0.441
Bra039378
AT3G13220 (E=0.0) | ABC transporter family protein (681 aa)
     
   
  0.419
Bra032025
AT3G02970 (E=4e-144) EXL6 | EXL6 (EXORDIUM LIKE 6) (324 aa)
           
  0.406
Bra001070
AT3G02970 (E=8e-151) EXL6 | EXL6 (EXORDIUM LIKE 6) (327 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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