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Bra007970 protein (Brassica rapa) - STRING interaction network
"Bra007970" - AT1G71696 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007970AT1G71696 (E=9e-249) SOL1 | SOL1 (SUPPRESSOR OF LLP1 1); carboxypeptidase/ metallocarboxypeptidase/ zinc ion binding (489 aa)    
Predicted Functional Partners:
Bra039126
AT3G01340 (E=4e-173) | protein transport protein SEC13 family protein / WD-40 repeat family protein (302 aa)
       
      0.722
Bra022774
AT2G30050 (E=2e-176) | transducin family protein / WD-40 repeat family protein (301 aa)
       
      0.722
Bra021603
AT2G30050 (E=7e-170) | transducin family protein / WD-40 repeat family protein (692 aa)
       
      0.722
Bra018343
AT2G30050 (E=1e-167) | transducin family protein / WD-40 repeat family protein (365 aa)
       
      0.722
Bra038022
AT1G70320 (E=0.0) UPL2 | UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase (3654 aa)
       
      0.622
Bra037097
AT1G55860 (E=3e-035) UPL1 | UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase (487 aa)
       
      0.622
Bra035452
AT1G70320 (E=3e-011) UPL2 | UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase (284 aa)
       
      0.622
Bra027853
AT1G55860 (E=8e-051) UPL1 | UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase (625 aa)
       
      0.622
Bra027850
AT1G55860 (E=8e-264) UPL1 | UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase (3784 aa)
       
      0.622
Bra040685
AT3G53090 (E=0.0) UPL7 | UPL7; ubiquitin-protein ligase (1143 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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