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Bra007977 protein (Brassica rapa) - STRING interaction network
"Bra007977" - AT1G71410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007977AT1G71410 (E=0.0) | protein kinase family protein (896 aa)    
Predicted Functional Partners:
Bra021104
AT3G15352 (E=5e-026) ATCOX17, COX17 | ATCOX17; copper chaperone (78 aa)
       
      0.615
Bra019008
AT1G53030 (E=2e-035) | cytochrome c oxidase copper chaperone family protein (72 aa)
       
      0.615
Bra019539
AT3G48330 (E=5e-072) PIMT1, ATPIMT1 | PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1); protein-L-isoaspartate (D-aspartate) O-methyltransferase (184 aa)
       
      0.520
Bra000614
AT5G50240 (E=8e-117) PIMT2 | PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase (267 aa)
       
      0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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