STRINGSTRING
Bra007991 protein (Brassica rapa) - STRING interaction network
"Bra007991" - AT1G71880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007991AT1G71880 (E=2e-219) SUC1, ATSUC1 | SUC1 (Sucrose-proton symporter 1); carbohydrate transmembrane transporter/ sucrose-hydrogen symporter/ sugar-hydrogen symporter (513 aa)    
Predicted Functional Partners:
Bra018036
AT3G48750 (E=3e-166) CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase (294 aa)
       
 
  0.611
Bra039642
AT1G50310 (E=8e-256) ATSTP9, STP9 | STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar-hydrogen symporter (516 aa)
           
  0.476
Bra018841
AT1G50310 (E=2e-257) ATSTP9, STP9 | STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar-hydrogen symporter (516 aa)
           
  0.476
Bra038242
AT3G19930 (E=4e-266) STP4, ATSTP4 | STP4 (SUGAR TRANSPORTER 4); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sucrose-hydrogen symporter/ sugar-hydrogen symporter (514 aa)
           
  0.473
Bra001766
AT3G19930 (E=4e-267) STP4, ATSTP4 | STP4 (SUGAR TRANSPORTER 4); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sucrose-hydrogen symporter/ sugar-hydrogen symporter (514 aa)
           
  0.473
Bra011972
AT2G28160 (E=1e-145) FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 | FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor (316 aa)
           
  0.420
Bra022476
AT1G65450 (E=4e-135) | transferase family protein (451 aa)
           
  0.414
Bra028573
AT5G10720 (E=0.0) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (911 aa)
           
  0.414
Bra009011
AT5G10720 (E=2e-250) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (898 aa)
           
  0.414
Bra006075
AT5G10720 (E=7e-264) AHK5, CKI2 | AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase (934 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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