STRINGSTRING
Bra007996 protein (Brassica rapa) - STRING interaction network
"Bra007996" - AT1G71930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007996AT1G71930 (E=2e-150) VND7, ANAC030 | VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7); transcription activator/ transcription factor/ transcription regulator (327 aa)    
Predicted Functional Partners:
Bra012065
AT5G66300 (E=8e-126) ANAC105, VND3, NAC105 | NAC105 (NAC DOMAIN CONTAINING PROTEIN 105); transcription factor (292 aa)
       
 
0.621
Bra029118
AT5G52380 (E=1e-103) | zinc knuckle (CCHC-type) family protein (267 aa)
       
      0.612
Bra010077
AT5G62380 (E=2e-173) VND6, ANAC101 | ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101); transcription activator/ transcription factor/ transcription regulator (347 aa)
       
 
0.560
Bra029266
AT5G62380 (E=2e-133) VND6, ANAC101 | ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101); transcription activator/ transcription factor/ transcription regulator (364 aa)
       
 
0.559
Bra008849
AT5G13180 (E=3e-116) ANAC083 | ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (337 aa)
       
 
0.554
Bra006186
AT5G13180 (E=5e-120) ANAC083 | ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (248 aa)
       
 
0.540
Bra023395
AT5G13180 (E=4e-119) ANAC083 | ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (247 aa)
       
 
0.538
Bra029696
AT3G08500 (E=1e-137) MYB83, AtMYB83 | MYB83 (myb domain protein 83); DNA binding / transcription factor (333 aa)
     
   
  0.526
Bra001284
AT3G08500 (E=2e-152) MYB83, AtMYB83 | MYB83 (myb domain protein 83); DNA binding / transcription factor (340 aa)
     
   
  0.526
Bra008875
AT5G12870 (E=8e-123) ATMYB46, MYB46 | MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor (280 aa)
           
  0.511
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]