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Bra008001 protein (Brassica rapa) - STRING interaction network
"Bra008001" - AT1G72010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008001AT1G72010 (E=3e-117) | TCP family transcription factor, putative (374 aa)    
Predicted Functional Partners:
Bra024875
AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (573 aa)
       
      0.622
Bra011768
AT4G37460 (E=0.0) SRFR1 | SRFR1 (SUPPRESSOR OF RPS4-RLD 1); protein complex scaffold (1034 aa)
       
      0.612
Bra031991
AT1G66350 (E=3e-153) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (505 aa)
       
      0.579
Bra000114
AT2G28290 (E=0.0) SYD, CHR3 | SYD (SPLAYED); ATPase/ chromatin binding (3275 aa)
       
      0.502
Bra039158
AT3G02150 (E=2e-101) PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor (309 aa)
           
  0.478
Bra032365
AT1G30210 (E=2e-064) TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor (318 aa)
           
  0.474
Bra030952
AT1G53230 (E=5e-045) TCP3 | TCP3; transcription factor (345 aa)
           
  0.474
Bra001032
AT3G02150 (E=2e-096) PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor (538 aa)
           
  0.448
Bra005967
AT5G08070 (E=7e-067) TCP17 | TCP17 (TCP DOMAIN PROTEIN 17); transcription factor (246 aa)
           
  0.414
Bra038350
AT1G68800 (E=2e-082) BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 12); transcription factor (335 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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