STRINGSTRING
Bra008006 protein (Brassica rapa) - STRING interaction network
"Bra008006" - AT1G72100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008006AT1G72100 (E=5e-102) | late embryogenesis abundant domain-containing protein / LEA domain-containing protein (462 aa)    
Predicted Functional Partners:
Bra040043
AT3G07960 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (713 aa)
       
      0.515
Bra037379
AT4G01190 (E=7e-172) ATPIPK10 | ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10); 1-phosphatidylinositol-4-phosphate 5-kinase (631 aa)
       
      0.515
Bra033262
AT1G01460 (E=2e-213) ATPIPK11, PIPK11 | PIPK11; 1-phosphatidylinositol-4-phosphate 5-kinase/ phosphatidylinositol phosphate kinase (425 aa)
       
      0.515
Bra031742
AT1G60890 (E=2e-308) | phosphatidylinositol-4-phosphate 5-kinase family protein (693 aa)
       
      0.515
Bra029805
AT3G09920 (E=0.0) PIP5K9 | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase (817 aa)
       
      0.515
Bra027121
AT1G60890 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (779 aa)
       
      0.515
Bra019892
AT1G10900 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (759 aa)
       
      0.515
Bra016396
AT1G21980 (E=0.0) ATPIP5K1, ATPIPK1 | ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase (734 aa)
       
      0.515
Bra014660
AT3G56960 (E=0.0) PIP5K4 | PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4); 1-phosphatidylinositol-4-phosphate 5-kinase (773 aa)
       
      0.515
Bra008331
AT1G21980 (E=0.0) ATPIP5K1, ATPIPK1 | ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase (741 aa)
       
      0.515
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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