STRINGSTRING
Bra008012 protein (Brassica rapa) - STRING interaction network
"Bra008012" - AT1G72150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008012AT1G72150 (E=2e-178) PATL1 | PATL1 (PATELLIN 1); transporter (562 aa)    
Predicted Functional Partners:
Bra013947
AT4G26090 (E=0.0) RPS2 | RPS2 (RESISTANT TO P. SYRINGAE 2); protein binding (907 aa)
       
 
  0.621
Bra026978
AT1G12210 (E=8e-304) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (890 aa)
       
 
  0.580
Bra026977
AT1G12210 (E=0.0) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (886 aa)
       
 
  0.580
Bra026924
AT1G12210 (E=2e-203) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (847 aa)
       
 
  0.580
Bra026923
AT1G12210 (E=1e-205) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (852 aa)
       
 
  0.580
Bra026682
AT1G12210 (E=4e-231) RFL1 | RFL1 (RPS5-like 1); ATP binding / protein binding (837 aa)
       
 
  0.580
Bra018245
AT5G63020 (E=2e-206) | disease resistance protein (CC-NBS-LRR class), putative (860 aa)
       
 
  0.580
Bra039949
AT3G22410 (E=2e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cellular retinaldehyde-binding/triple function, C-terminal (InterPro-IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro-IPR011074); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species- Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source- NCBI BLink). (401 aa)
       
 
  0.514
Bra035864
AT5G63060 (E=2e-062) | transporter (254 aa)
       
 
  0.514
Bra033247
AT1G01630 (E=3e-132) | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (255 aa)
       
 
  0.514
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]