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Bra008030 protein (Brassica rapa) - STRING interaction network
"Bra008030" - AT1G72370 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
Bra008030AT1G72370 (E=1e-136) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (296 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra037884
AT1G34030 (E=1e-074) | 40S ribosomal protein S18 (RPS18B) (187 aa)
   
  0.999
Bra034447.1-P
AT1G34030 (E=8e-075) | 40S ribosomal protein S18 (RPS18B) (152 aa)
   
  0.999
Bra028028
AT1G34030 (E=6e-074) | 40S ribosomal protein S18 (RPS18B) (218 aa)
   
  0.999
Bra023455
AT5G14320 (E=4e-018) | 30S ribosomal protein S13, chloroplast (CS13) (100 aa)
   
  0.999
Bra015657
AT1G77750 (E=3e-079) | 30S ribosomal protein S13, chloroplast, putative (154 aa)
   
  0.999
Bra008766
AT5G14320 (E=1e-081) | 30S ribosomal protein S13, chloroplast (CS13) (169 aa)
   
  0.999
Bra008332
AT1G77750 (E=9e-079) | 30S ribosomal protein S13, chloroplast, putative (154 aa)
   
  0.999
Bra006248
AT5G14320 (E=2e-082) | 30S ribosomal protein S13, chloroplast (CS13) (169 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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