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Bra008039 protein (Brassica rapa) - STRING interaction network
"Bra008039" - AT1G72560 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008039AT1G72560 (E=1e-015) PSD | PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding (56 aa)    
Predicted Functional Partners:
Bra020079
AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (721 aa)
     
  0.968
Bra035562
AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.968
Bra006530
AT5G20010 (E=2e-118) RAN-1, RAN1, ATRAN1 | RAN-1; GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.968
Bra002926
AT5G55190 (E=4e-119) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.968
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
     
 
  0.957
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
     
 
  0.957
Bra034530
AT4G32720 (E=5e-177) AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (439 aa)
     
 
  0.788
Bra011375
AT4G32720 (E=5e-178) AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (446 aa)
     
 
  0.788
Bra004882
AT2G45000 (E=1e-107) EMB2766 | EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore (784 aa)
     
  0.754
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
  0.739
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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