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Bra008042 protein (Brassica rapa) - STRING interaction network
"Bra008042" - AT1G72700 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008042AT1G72700 (E=0.0) | haloacid dehalogenase-like hydrolase family protein (1188 aa)    
Predicted Functional Partners:
Bra034736
AT3G12740 (E=2e-168) ALIS1 | ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (343 aa)
     
 
  0.644
Bra030808
AT1G54320 (E=1e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (361 aa)
     
 
  0.644
Bra026722
AT1G16360 (E=3e-177) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (681 aa)
     
 
  0.644
Bra017577
AT5G46150 (E=9e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (342 aa)
     
 
  0.644
Bra003610
AT1G79450 (E=1e-175) ALIS5 | ALIS5 (ALA-Interacting Subunit 5) (342 aa)
     
 
  0.644
Bra001467
AT3G12740 (E=2e-169) ALIS1 | ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (349 aa)
     
 
  0.644
Bra037215
AT2G14255 (E=3e-277) | zinc ion binding (546 aa)
       
      0.596
Bra020101
AT5G20350 (E=3e-152) TIP1 | TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (572 aa)
       
      0.596
Bra006555
AT5G20350 (E=3e-131) TIP1 | TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (375 aa)
       
      0.596
Bra002296
AT5G20350 (E=5e-152) TIP1 | TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (574 aa)
       
      0.596
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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