STRINGSTRING
Bra008043 protein (Brassica rapa) - STRING interaction network
"Bra008043" - AT1G72710 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008043AT1G72710 (E=5e-233) CKL2 | CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (465 aa)    
Predicted Functional Partners:
Bra038265
AT3G46060 (E=2e-090) ARA3 | ATRAB8A; GTP binding (376 aa)
     
 
    0.919
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
     
 
    0.919
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
     
 
    0.919
Bra038890
AT3G51270 (E=1e-198) | ATP binding / catalytic/ protein serine/threonine kinase (456 aa)
     
  0.880
Bra036823
AT3G51270 (E=2e-194) | ATP binding / catalytic/ protein serine/threonine kinase (452 aa)
     
  0.880
Bra012860
AT3G51270 (E=1e-115) | ATP binding / catalytic/ protein serine/threonine kinase (319 aa)
     
  0.880
Bra030096
AT1G31660 (E=2e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (244 aa)
       
  0.880
Bra014995
AT1G31660 (E=2e-030) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (148 aa)
       
  0.880
Bra014911
AT1G31660 (E=5e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (707 aa)
       
  0.880
Bra039653
AT1G42440 (E=1e-300) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G06720.1); Has 2447 Blast hits to 1812 proteins in 205 species- Archae - 0; Bacteria - 115; Metazoa - 903; Fungi - 423; Plants - 100; Viruses - 53; Other Eukaryotes - 853 (source- NCBI BLink). (773 aa)
     
  0.828
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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