STRINGSTRING
Bra008061 protein (Brassica rapa) - STRING interaction network
"Bra008061" - AT1G72970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008061AT1G72970 (E=1e-315) HTH, EDA17 | HTH (HOTHEAD); FAD binding / aldehyde-lyase/ mandelonitrile lyase (594 aa)    
Predicted Functional Partners:
Bra004951
AT2G45970 (E=4e-295) CYP86A8, LCR | CYP86A8; fatty acid (omega-1)-hydroxylase/ oxygen binding (538 aa)
     
 
  0.942
Bra037336
AT4G00360 (E=1e-304) CYP86A2, ATT1 | CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (559 aa)
         
  0.936
Bra008519
AT4G00360 (E=4e-301) CYP86A2, ATT1 | CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (555 aa)
         
  0.936
Bra006743
AT5G58860 (E=2e-282) CYP86A1, CYP86 | CYP86A1 (CYTOCHROME P450 86 A1); fatty acid (omega-1)-hydroxylase/ oxygen binding (514 aa)
         
  0.906
Bra033251
AT1G01600 (E=1e-280) CYP86A4 | CYP86A4; fatty acid (omega-1)-hydroxylase/ oxygen binding (555 aa)
         
  0.903
Bra032642
AT1G01600 (E=7e-284) CYP86A4 | CYP86A4; fatty acid (omega-1)-hydroxylase/ oxygen binding (536 aa)
         
  0.903
Bra029361
AT5G23190 (E=5e-282) CYP86B1 | CYP86B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (555 aa)
         
  0.898
Bra013024
AT5G23190 (E=3e-299) CYP86B1 | CYP86B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (556 aa)
         
  0.898
Bra032872
AT5G44050 (E=5e-017) | MATE efflux family protein (108 aa)
   
 
  0.815
Bra039775
AT3G48000 (E=3e-025) ALDH2B4, ALDH2, ALDH2A | ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/ ATP binding / aldehyde dehydrogenase (NAD) (184 aa)
   
 
  0.766
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]