STRINGSTRING
Bra008066 protein (Brassica rapa) - STRING interaction network
"Bra008066" - AT1G73010 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008066AT1G73010 (E=2e-139) | phosphatase (292 aa)    
Predicted Functional Partners:
Bra000603
AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)
     
 
    0.920
Bra040704
AT3G02040 (E=1e-173) SRG3 | SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (367 aa)
     
 
  0.586
Bra028485
AT5G41080 (E=1e-176) | glycerophosphoryl diester phosphodiesterase family protein (380 aa)
     
 
  0.559
Bra025522
AT5G41080 (E=1e-182) | glycerophosphoryl diester phosphodiesterase family protein (375 aa)
     
 
  0.559
Bra035967
AT5G43300 (E=7e-167) | glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (365 aa)
     
 
  0.545
Bra027481
AT5G43300 (E=2e-157) | glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase (411 aa)
     
 
  0.545
Bra027140
AT1G60690 (E=2e-161) | aldo/keto reductase family protein (334 aa)
         
  0.531
Bra037030
AT4G33000 (E=3e-114) CBL10, ATCBL10 | CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding (258 aa)
           
  0.475
Bra034543
AT4G33000 (E=2e-116) CBL10, SCABP8, ATCBL10 | CBL10 (CALCINEURIN B-LIKE 10); calcium ion binding (246 aa)
           
  0.475
Bra031003
AT1G17720 (E=7e-262) ATB BETA | ATB BETA; nucleotide binding / protein phosphatase type 2A regulator (495 aa)
           
  0.470
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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