STRINGSTRING
Bra008067 protein (Brassica rapa) - STRING interaction network
"Bra008067" - AT1G73030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008067AT1G73030 (E=2e-053) VPS46.2 | VPS46.2 (174 aa)    
Predicted Functional Partners:
Bra018640
AT2G27600 (E=1e-227) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (430 aa)
     
  0.979
Bra012009
AT2G27600 (E=2e-222) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
     
  0.979
Bra007144
AT1G48350 (E=2e-024) | ribosomal protein L18 family protein (181 aa)
     
  0.979
Bra000503
AT2G27600 (E=1e-236) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
     
  0.979
Bra033752
AT5G44560 (E=4e-070) VPS2.2 | VPS2.2 (207 aa)
     
  0.978
Bra027559
AT5G44560 (E=1e-098) VPS2.2 | VPS2.2 (224 aa)
     
  0.978
Bra020925
AT5G44560 (E=6e-107) VPS2.2 | VPS2.2 (223 aa)
     
  0.978
Bra015280
AT1G03950 (E=1e-092) VPS2.3 | VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) (211 aa)
     
  0.978
Bra013459
AT5G44560 (E=2e-085) VPS2.2 | VPS2.2 (197 aa)
     
  0.978
Bra013163
AT2G06530 (E=8e-087) VPS2.1 | VPS2.1 (225 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]