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Bra008077 protein (Brassica rapa) - STRING interaction network
"Bra008077" - AT1G73170 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008077AT1G73170 (E=7e-289) | ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase (666 aa)    
Predicted Functional Partners:
Bra020331
AT5G59070 (E=2e-240) | glycosyl transferase family 1 protein (504 aa)
           
  0.605
Bra013399
AT4G19460 (E=2e-247) | glycosyl transferase family 1 protein (494 aa)
           
  0.605
Bra003857
AT1G73160 (E=6e-245) | glycosyl transferase family 1 protein (488 aa)
           
  0.541
Bra029714
AT3G08740 (E=9e-045) | elongation factor P (EF-P) family protein (235 aa)
              0.437
Bra024702
AT1G26630 (E=2e-077) FBR12, ATELF5A-2, ELF5A-2 | FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor (159 aa)
              0.437
Bra016282
AT1G26630 (E=4e-078) FBR12, ATELF5A-2, ELF5A-2 | FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor (159 aa)
              0.437
Bra012447
AT1G26665 (E=5e-080) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- RNA polymerase II mediator complex protein-related (TAIR-AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (513 aa)
              0.437
Bra009644
AT3G08740 (E=2e-092) | elongation factor P (EF-P) family protein (293 aa)
              0.437
Bra006777
AT5G58260 (E=3e-103) | Encodes subunit NDH-N of NAD(P)H-plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. (208 aa)
              0.437
Bra004379
AT1G69410 (E=2e-086) ATELF5A-3, ELF5A-3 | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (158 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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