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Bra008094 protein (Brassica rapa) - STRING interaction network
"Bra008094" - AT1G73260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008094AT1G73260 (E=3e-047) | trypsin and protease inhibitor family protein / Kunitz family protein (212 aa)    
Predicted Functional Partners:
Bra036335
AT1G45145 (E=1e-053) ATTRX5, ATH5, LIV1 | ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (117 aa)
       
      0.616
Bra014037
AT1G45145 (E=1e-055) ATTRX5, ATH5, LIV1 | ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (118 aa)
       
      0.616
Bra038657
AT5G63720 (E=6e-031) | unknown protein (466 aa)
           
  0.456
Bra037752
AT5G63720 (E=2e-045) | unknown protein (500 aa)
           
  0.456
Bra029701
AT3G08600 (E=9e-086) | unknown protein (310 aa)
           
  0.403
Bra021230
AT3G17180 (E=5e-251) scpl33 | scpl33 (serine carboxypeptidase-like 33); serine-type carboxypeptidase (474 aa)
           
  0.403
Bra010733
AT4G38650 (E=2e-280) | glycosyl hydrolase family 10 protein (564 aa)
           
  0.403
Bra001352
AT3G08600 (E=3e-085) | unknown protein (307 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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