STRINGSTRING
Bra008097 protein (Brassica rapa) - STRING interaction network
"Bra008097" - AT1G73470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008097AT1G73470 (E=1e-149) | unknown protein (356 aa)    
Predicted Functional Partners:
Bra024233
AT4G28030 (E=1e-118) | GCN5-related N-acetyltransferase (GNAT) family protein (264 aa)
   
        0.530
Bra034190
AT4G03150 (E=2e-067) | unknown protein (178 aa)
   
          0.524
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
          0.518
Bra000947
AT4G01150 (E=5e-068) | unknown protein (164 aa)
   
          0.518
Bra022892
AT2G32640 (E=2e-174) | unknown protein (489 aa)
   
          0.516
Bra008533
AT4G01150 (E=1e-063) | unknown protein (169 aa)
   
          0.516
Bra004459
AT2G47400 (E=4e-057) CP12-1, CP12 | CP12-1 (127 aa)
   
          0.516
Bra010636
AT4G38100 (E=3e-064) | unknown protein (191 aa)
   
          0.515
Bra025213
AT3G26580 (E=2e-144) | INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Tetratricopeptide region (InterPro-IPR013026); Has 2147 Blast hits to 1154 proteins in 168 species- Archae - 2; Bacteria - 99; Metazoa - 1301; Fungi - 180; Plants - 105; Viruses - 57; Other Eukaryotes - 403 (source- NCBI BLink). (353 aa)
   
          0.512
Bra029139
AT5G52110 (E=6e-090) HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) (224 aa)
   
          0.511
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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