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Bra008098 protein (Brassica rapa) - STRING interaction network
"Bra008098" - AT5G61220 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008098AT5G61220 (E=3e-035) | complex 1 family protein / LVR family protein (87 aa)    
Predicted Functional Partners:
Bra037826
AT5G65720 (E=6e-222) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (457 aa)
       
  0.975
Bra024414
AT5G65720 (E=3e-018) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (155 aa)
       
  0.975
Bra034195
AT4G03240 (E=6e-020) ATFH, FH | FH (FRATAXIN HOMOLOG) (155 aa)
     
  0.901
Bra000839
AT4G03240 (E=2e-051) ATFH, FH | FH (FRATAXIN HOMOLOG) (161 aa)
     
  0.901
Bra040638
AT3G05020 (E=4e-053) ACP1, ACP | ACP1 (acyl carrier protein 1); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (134 aa)
       
      0.897
Bra039471
AT3G05020 (E=9e-042) ACP1, ACP | ACP1 (acyl carrier protein 1); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (134 aa)
       
      0.897
Bra036109
AT5G27200 (E=1e-055) ACP5 | ACP5 (acyl carrier protein 5); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (141 aa)
       
      0.897
Bra035355
AT1G65290 (E=3e-049) mtACP2 | mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
       
      0.897
Bra027965
AT1G54630 (E=4e-042) ACP3 | ACP3 (ACYL CARRIER PROTEIN 3); acyl carrier ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
       
      0.897
Bra022484
AT1G65290 (E=7e-054) mtACP2 | mtACP2 (mitochondrial acyl carrier protein 2); acyl carrier/ metal ion binding ; Carrier of the growing fatty acid chain in fatty acid biosynthesis (131 aa)
       
      0.897
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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