STRINGSTRING
Bra008104 protein (Brassica rapa) - STRING interaction network
"Bra008104" - AT1G73580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008104AT1G73580 (E=1e-086) | C2 domain-containing protein (168 aa)    
Predicted Functional Partners:
Bra015612
AT1G47550 (E=0.0) | unknown protein (1112 aa)
       
      0.515
Bra038595
AT5G62960 (E=2e-182) | unknown protein (343 aa)
           
  0.499
Bra035871
AT5G62960 (E=6e-179) | unknown protein (346 aa)
           
  0.483
Bra037141
AT5G66890 (E=5e-175) | disease resistance protein (CC-NBS-LRR class), putative (421 aa)
           
  0.479
Bra024908
AT2G01070 (E=1e-238) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system, integral to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Transmembrane receptor, eukaryota (InterPro-IPR009637); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G72480.1); Has 500 Blast hits to 499 proteins in 125 species- Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 99; Plants - 97; Viruses - 0; Other Eukaryotes - 33 (source- NCBI BLink). (495 aa)
           
  0.456
Bra038957
AT5G37310 (E=0.0) | LOCATED IN- integral to membrane, Golgi apparatus, plant-type cell wall; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nonaspanin (TM9SF) (InterPro-IPR004240); BEST Arabidopsis thaliana protein match is- endomembrane protein 70, putative (TAIR-AT1G14670.1); Has 1019 Blast hits to 986 proteins in 161 species- Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 148; Plants - 242; Viruses - 0; Other Eukaryotes - 185 (source- NCBI BLink). (592 aa)
           
  0.424
Bra031408
AT1G61670 (E=2e-247) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s- Transmembrane receptor, eukaryota (InterPro-IPR009637); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10980.1); Has 473 Blast hits to 471 proteins in 125 species- Archae - 0; Bacteria - 2; Metazoa - 242; Fungi - 99; Plants - 92; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink). (511 aa)
           
  0.410
Bra033378
AT1G03170 (E=6e-071) | unknown protein (215 aa)
           
  0.406
Bra008282
AT1G76850 (E=3e-291) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1147 aa)
       
      0.400
Bra008281
AT1G76850 (E=4e-017) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (414 aa)
       
      0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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