STRINGSTRING
Bra008108 protein (Brassica rapa) - STRING interaction network
"Bra008108" - AT4G36840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008108AT4G36840 (E=3e-038) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch related (InterPro-IPR013089), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- kelch repeat-containing F-box family protein (TAIR-AT3G24610.1); Has 277 Blast hits to 269 proteins in 3 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 277; Viruses [...] (381 aa)    
Predicted Functional Partners:
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
     
 
  0.432
Bra015086
AT3G24800 (E=2e-094) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (378 aa)
         
  0.401
Bra013241
AT3G24800 (E=4e-105) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (390 aa)
         
  0.401
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]