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Bra008121 protein (Brassica rapa) - STRING interaction network
"Bra008121" - AT1G73980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008121AT1G73980 (E=2e-048) | phosphoribulokinase/uridine kinase family protein (118 aa)    
Predicted Functional Partners:
Bra000114
AT2G28290 (E=0.0) SYD, CHR3 | SYD (SPLAYED); ATPase/ chromatin binding (3275 aa)
     
  0.968
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
   
  0.965
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
   
  0.965
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
  0.962
Bra033861
AT1G32060 (E=2e-196) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (395 aa)
   
  0.962
Bra023235
AT1G32060 (E=3e-210) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (397 aa)
   
  0.962
Bra012464
AT1G26190 (E=0.0) | phosphoribulokinase/uridine kinase family protein (675 aa)
   
0.953
Bra011014
AT1G26190 (E=2e-307) | phosphoribulokinase/uridine kinase family protein (635 aa)
   
0.953
Bra008117
AT1G73980 (E=9e-160) | phosphoribulokinase/uridine kinase family protein (714 aa)
   
0.953
Bra018153
AT3G47390 (E=5e-292) | cytidine/deoxycytidylate deaminase family protein (587 aa)
       
    0.895
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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