STRINGSTRING
Bra008122 protein (Brassica rapa) - STRING interaction network
"Bra008122" - AT5G52882 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008122AT5G52882 (E=6e-021) | ATP binding / nucleoside-triphosphatase/ nucleotide binding (212 aa)    
Predicted Functional Partners:
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
  0.870
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
     
  0.870
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
     
  0.817
Bra035652
AT2G29070 (E=2e-148) | ubiquitin fusion degradation UFD1 family protein (308 aa)
     
  0.817
Bra030307
AT2G21270 (E=9e-137) | ubiquitin fusion degradation UFD1 family protein (321 aa)
     
  0.817
Bra029520
AT4G04860 (E=2e-127) DER2.2 | DER2.2 (DERLIN-2.2) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
  0.752
Bra020870
AT4G21810 (E=9e-127) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
  0.752
Bra013563
AT4G21810 (E=5e-110) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (284 aa)
       
  0.752
Bra011097
AT4G29330 (E=4e-109) DER1 | DER1 (DERLIN-1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (262 aa)
       
  0.752
Bra038085
AT4G15410 (E=9e-118) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (374 aa)
     
  0.748
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]