STRINGSTRING
Bra008135 protein (Brassica rapa) - STRING interaction network
"Bra008135" - AT1G74150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008135AT1G74150 (E=2e-138) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Galactose oxidase/kelch, beta-propeller (InterPro-IPR011043), Kelch repeat type 1 (InterPro-IPR006652), Kelch repeat type 2 (InterPro-IPR011498), Kelch-type beta propeller (InterPro-IPR015915); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G18610.1); Has 8525 Blast hits to 4249 proteins in 295 species- Archae - 10; Bacteria [...] (489 aa)    
Predicted Functional Partners:
Bra020408
AT5G57860 (E=2e-033) | ubiquitin family protein (152 aa)
       
 
  0.616
Bra006794
AT5G57860 (E=3e-041) | ubiquitin family protein (93 aa)
       
 
  0.616
Bra006730
AT5G59140 (E=1e-050) | SKP1 family protein (96 aa)
       
      0.612
Bra002588
AT5G59140 (E=5e-050) | SKP1 family protein (96 aa)
       
      0.612
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
     
 
  0.563
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
     
 
  0.563
Bra038548
AT2G18700 (E=0.0) ATTPS11, TPS11, ATTPSB | ATTPS11; transferase, transferring glycosyl groups (864 aa)
     
      0.561
Bra035049
AT1G78580 (E=0.0) ATTPS1, TPS1 | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups (950 aa)
     
      0.561
Bra031526
AT1G60140 (E=0.0) ATTPS10, TPS10 | ATTPS10 (trehalose phosphate synthase); transferase, transferring glycosyl groups / trehalose-phosphatase (857 aa)
     
      0.561
Bra030651
AT1G06410 (E=0.0) ATTPS7, TPS7, ATTPSA | ATTPS7; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase (852 aa)
     
      0.561
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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