STRINGSTRING
Bra008136 protein (Brassica rapa) - STRING interaction network
"Bra008136" - AT1G74160 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008136AT1G74160 (E=0.0) | unknown protein (1004 aa)    
Predicted Functional Partners:
Bra021469
AT3G02320 (E=6e-295) | RNA binding / tRNA (guanine-N2-)-methyltransferase (573 aa)
           
  0.541
Bra008750
AT5G14600 (E=4e-159) | tRNA (adenine-N1-)-methyltransferase (320 aa)
           
  0.541
Bra007217
AT3G56120 (E=4e-094) | Met-10+ like family protein ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (431 aa)
           
  0.541
Bra039412
AT3G58650 (E=2e-162) | unknown protein (959 aa)
           
  0.540
Bra038036
AT5G01230 (E=7e-176) | FtsJ-like methyltransferase family protein ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (309 aa)
           
  0.540
Bra024923
AT5G47680 (E=4e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- tRNA (guanine-N1-)-methyltransferase (InterPro-IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro-IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro-IPR007356); Has 9601 Blast hits to 4663 proteins in 357 species- Archae - 22; Bacteria - 498; Metazoa - 3588; Fungi - 1024; Plants - 270; Viruses - 29; Other E [...] (348 aa)
           
  0.540
Bra017470
AT5G47680 (E=5e-120) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- tRNA (guanine-N1-)-methyltransferase (InterPro-IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro-IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro-IPR007356); Has 9601 Blast hits to 4663 proteins in 357 species- Archae - 22; Bacteria - 498; Metazoa - 3588; Fungi - 1024; Plants - 270; Viruses - 29; Other E [...] (344 aa)
           
  0.540
Bra038528
AT2G22400 (E=0.0) | NOL1/NOP2/sun family protein (810 aa)
           
  0.530
Bra030242
AT2G22400 (E=0.0) | NOL1/NOP2/sun family protein (793 aa)
           
  0.530
Bra006323
AT5G15810 (E=3e-291) | N2,N2-dimethylguanosine tRNA methyltransferase family protein (582 aa)
           
  0.511
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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