STRINGSTRING
Bra008143 protein (Brassica rapa) - STRING interaction network
"Bra008143" - AT1G74250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008143AT1G74250 (E=7e-138) | DNAJ heat shock N-terminal domain-containing protein (661 aa)    
Predicted Functional Partners:
Bra036932
AT1G43860 (E=7e-181) | transcription factor (357 aa)
     
 
  0.775
Bra033552
AT4G38360 (E=4e-068) | unknown protein (540 aa)
     
 
  0.775
Bra032193
AT1G43860 (E=2e-182) | transcription factor (365 aa)
     
 
  0.775
Bra032089
AT4G31420 (E=1e-110) | zinc finger (C2H2 type) family protein (399 aa)
     
 
  0.759
Bra011270
AT2G24500 (E=3e-134) FZF | FZF; transcription factor (395 aa)
     
 
  0.759
Bra007844
AT2G24500 (E=2e-155) FZF | FZF; transcription factor (400 aa)
     
 
  0.759
Bra040033
AT2G03820 (E=7e-241) | nonsense-mediated mRNA decay NMD3 family protein (509 aa)
     
      0.624
Bra004140
AT2G03820 (E=7e-262) | nonsense-mediated mRNA decay NMD3 family protein (517 aa)
     
      0.624
Bra027593
AT5G45130 (E=7e-105) ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RHA1 (RAB HOMOLOG 1); GTP binding (199 aa)
       
      0.612
Bra025091
AT5G45130 (E=2e-104) ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RHA1 (RAB HOMOLOG 1); GTP binding (200 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]