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Bra008152 protein (Brassica rapa) - STRING interaction network
"Bra008152" - AT1G74470 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008152AT1G74470 (E=1e-245) | geranylgeranyl reductase (466 aa)    
Predicted Functional Partners:
Bra011709
AT4G36810 (E=1e-164) GGPS1 | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (363 aa)
   
  0.965
Bra028096
AT2G18620 (E=2e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (359 aa)
   
  0.961
Bra035042
AT1G78510 (E=3e-183) SPS1 | SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (419 aa)
   
  0.950
Bra026006
AT1G17050 (E=2e-192) SPS2 | SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase (424 aa)
   
  0.950
Bra011898
AT4G38460 (E=2e-138) GGR | GGR (geranylgeranyl reductase); farnesyltranstransferase (322 aa)
   
  0.950
Bra031496
AT1G60600 (E=9e-155) ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase (376 aa)
   
 
    0.941
Bra038834
AT2G18950 (E=2e-190) HPT1, TPT1, ATHPT, VTE2 | HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate phytyltransferase/ prenyltransferase (394 aa)
   
 
  0.935
Bra034798
AT3G11945 (E=5e-178) ATHST | homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (1084 aa)
   
 
  0.935
Bra013720
AT4G23660 (E=6e-152) AtPPT1 | AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1); 4-hydroxybenzoate nonaprenyltransferase (411 aa)
   
 
  0.935
Bra008569
AT5G17230 (E=4e-202) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (425 aa)
   
 
  0.929
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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