STRINGSTRING
Bra008163 protein (Brassica rapa) - STRING interaction network
"Bra008163" - AT1G74690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008163AT1G74690 (E=6e-088) IQD31 | IQD31 (IQ-domain 31); calmodulin binding (516 aa)    
Predicted Functional Partners:
Bra009498
AT5G03960 (E=2e-126) IQD12 | IQD12 (IQ-domain 12); calmodulin binding (382 aa)
           
  0.573
Bra032832
AT1G27500 (E=7e-295) | kinesin light chain-related (659 aa)
     
   
  0.546
Bra013672
AT4G23060 (E=1e-131) IQD22 | IQD22 (IQ-domain 22); calmodulin binding (496 aa)
           
  0.544
Bra040770
AT1G32250 (E=7e-078) | calmodulin, putative (166 aa)
       
 
  0.541
Bra035527
AT5G35670 (E=5e-125) iqd33 | iqd33 (IQ-domain 33); calmodulin binding (400 aa)
           
  0.541
Bra028807
AT5G03960 (E=7e-118) IQD12 | IQD12 (IQ-domain 12); calmodulin binding (380 aa)
           
  0.541
Bra015628
AT1G78120 (E=2e-233) | tetratricopeptide repeat (TPR)-containing protein (526 aa)
           
  0.537
Bra025315
AT3G27960 (E=0.0) | kinesin light chain-related (664 aa)
     
   
  0.489
Bra025924
AT1G18210 (E=2e-076) | calcium-binding protein, putative (167 aa)
       
 
  0.484
Bra016564
AT1G18210 (E=5e-077) | calcium-binding protein, putative (174 aa)
       
 
  0.484
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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