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Bra008164 protein (Brassica rapa) - STRING interaction network
"Bra008164" - AT1G74700 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008164AT1G74700 (E=2e-144) NUZ, TRZ1 | TRZ1 (TRNASE Z 1); 3’-tRNA processing endoribonuclease (287 aa)    
Predicted Functional Partners:
Bra027179
AT3G16260 (E=0.0) TRZ4 | TRZ4 (TRNASE Z 4); 3’-tRNA processing endoribonuclease/ catalytic (925 aa)
         
  0.945
Bra018950
AT1G52160 (E=0.0) TRZ3 | TRZ3 (TRNASE Z 3); 3’-tRNA processing endoribonuclease/ catalytic (813 aa)
         
  0.945
Bra013203
AT2G04530 (E=1e-165) CPZ, TRZ2 | CPZ; 3’-tRNA processing endoribonuclease (352 aa)
   
   
0.900
Bra040191
AT3G04480 (E=0.0) | endoribonuclease (712 aa)
           
  0.574
Bra001106
AT3G04480 (E=0.0) | endoribonuclease (719 aa)
           
  0.574
Bra031600
AT1G07910 (E=0.0) ATRNL, RNL | RNL (RNA LIGASE); 2’,3’-cyclic-nucleotide 3’-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase (1118 aa)
           
  0.532
Bra018674
AT1G07910 (E=0.0) ATRNL, RNL | RNL (RNA LIGASE); 2’,3’-cyclic-nucleotide 3’-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase (1064 aa)
           
  0.532
Bra033442
AT3G52300 (E=1e-089) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra012809
AT3G52300 (E=5e-081) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Bra006918
AT3G52300 (E=2e-080) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)
           
  0.472
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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