STRINGSTRING
Bra008172 protein (Brassica rapa) - STRING interaction network
"Bra008172" - AT1G19180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008172AT1G19180 (E=8e-062) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (240 aa)    
Predicted Functional Partners:
Bra010178
AT1G32640 (E=5e-263) ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | MYC2; DNA binding / transcription activator/ transcription factor (600 aa)
     
  0.993
Bra021281
AT3G17860 (E=3e-154) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (353 aa)
     
0.988
Bra023399
AT5G13220 (E=3e-074) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (184 aa)
     
  0.986
Bra002338
AT5G20900 (E=2e-040) JAZ12, TIFY3B | JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) (201 aa)
     
0.982
Bra016193
AT1G70700 (E=1e-063) JAZ9, TIFY7 | TIFY7 (249 aa)
     
 
  0.980
Bra007937
AT1G70700 (E=9e-085) JAZ9, TIFY7 | TIFY7 (250 aa)
     
 
  0.980
Bra005000
AT2G39940 (E=2e-311) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (603 aa)
       
  0.977
Bra000156
AT2G39940 (E=4e-307) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (590 aa)
       
  0.977
Bra008846
AT5G13220 (E=9e-081) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (196 aa)
     
0.976
Bra032362
AT1G30135 (E=1e-041) JAZ8, TIFY5A | JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) (133 aa)
     
 
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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