STRINGSTRING
Bra008176 protein (Brassica rapa) - STRING interaction network
"Bra008176" - AT1G19330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008176AT1G19330 (E=1e-097) | unknown protein (236 aa)    
Predicted Functional Partners:
Bra004926
AT2G45640 (E=4e-059) SAP18, ATSAP18 | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator (152 aa)
       
 
  0.793
Bra006276
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2) (1346 aa)
       
 
  0.789
Bra007324
AT3G57390 (E=6e-097) AGL18 | AGL18; transcription factor (255 aa)
       
 
  0.627
HD1
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (502 aa)
       
 
  0.612
Bra019424
AT3G44680 (E=5e-253) HDA9, HDA09 | HDA9 (HISTONE DEACETYLASE 9); histone deacetylase (426 aa)
       
      0.612
Bra033253
AT1G01570 (E=8e-224) | fringe-related protein (507 aa)
           
  0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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