STRINGSTRING
Bra008198 protein (Brassica rapa) - STRING interaction network
"Bra008198" - AT1G45000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008198AT1G45000 (E=4e-130) | 26S proteasome regulatory complex subunit p42D, putative (628 aa)    
Predicted Functional Partners:
Bra020079
AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (721 aa)
   
0.999
Bra019207
AT4G24820 (E=5e-208) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.999
Bra013838
AT4G24820 (E=8e-209) | 26S proteasome regulatory subunit, putative (RPN7) (387 aa)
     
  0.999
Bra032422
AT5G05780 (E=1e-032) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A) (299 aa)
     
  0.999
Bra028748
AT5G05780 (E=2e-146) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A) (308 aa)
     
  0.999
Bra017408
AT5G05780 (E=3e-053) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A) (308 aa)
     
  0.999
Bra009133
AT5G05780 (E=4e-147) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A) (308 aa)
     
  0.999
Bra006369
AT5G05780 (E=3e-045) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A) (401 aa)
     
  0.999
Bra005867
AT5G05780 (E=6e-148) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A) (308 aa)
     
  0.999
Bra024165
AT4G29040 (E=7e-047) RPT2a | RPT2a (regulatory particle AAA-ATPase 2a); ATPase (323 aa)
   
0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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