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Bra008201.1-P protein (Brassica rapa) - STRING interaction network
"Bra008201.1-P" - WAT1-related protein in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008201.1-PWAT1-related protein; AT1G75500 (E=5e-201) | nodulin MtN21 family protein (390 aa)    
Predicted Functional Partners:
Bra030034.1-P
AT1G27300 (E=3e-054) | unknown protein (198 aa)
       
      0.772
Bra026435.1-P
AT4G26450 (E=3e-158) | unknown protein (663 aa)
       
      0.750
Bra026434.1-P
Uncharacterized protein; AT4G26455 (E=5e-135) WIP1 | WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization (495 aa)
       
      0.750
Bra019104.1-P
AT4G26450 (E=6e-276) | unknown protein (708 aa)
       
      0.750
Bra010193.1-P
Uncharacterized protein; AT1G33060 (E=4e-228) ANAC014 | no apical meristem (NAM) family protein (636 aa)
       
      0.750
Bra032817.1-P
AT1G27300 (E=5e-053) | unknown protein (201 aa)
       
      0.745
Bra013361.1-P
Uncharacterized protein; AT4G18910 (E=3e-148) NIP1;2, NLM2 | NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel; Belongs to the MIP/aquaporin (TC 1.A.8) family (297 aa)
       
      0.699
Bra012567.1-P
Uncharacterized protein; AT4G18910 (E=7e-149) NIP1;2, NLM2 | NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel; Belongs to the MIP/aquaporin (TC 1.A.8) family (298 aa)
       
      0.699
Bra025437.1-P
Uncharacterized protein; AT5G37810 (E=2e-114) NIP4;1, NLM4 | NIP4;1 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel; Belongs to the MIP/aquaporin (TC 1.A.8) family (276 aa)
       
 
  0.550
Bra016159.1-P
Uncharacterized protein; AT1G71090 (E=3e-209) | auxin efflux carrier family protein (459 aa)
           
  0.541
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica rapa, Brassica rapa L., field mustard
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