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Bra008202 protein (Brassica rapa) - STRING interaction network
"Bra008202" - AT1G75510 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra008202AT1G75510 (E=4e-102) | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (260 aa)    
Predicted Functional Partners:
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
     
  0.982
Bra001354
AT3G10330 (E=1e-169) | transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) (312 aa)
     
  0.978
Bra039839
AT2G15430 (E=5e-166) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (321 aa)
       
  0.977
Bra015218
AT2G15430 (E=1e-167) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (319 aa)
       
  0.977
Bra031350
AT3G22320 (E=5e-105) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase (206 aa)
     
  0.977
Bra001864
AT3G22320 (E=7e-108) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase (206 aa)
     
  0.977
Bra033381
AT1G03270 (E=1e-206) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF21 (InterPro-IPR002550), Cystathionine beta-synthase, core (InterPro-IPR000644); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G14240.1); Has 6515 Blast hits to 6357 proteins in 1347 species- Archae - 64; Bacteria - 4189; Metazoa - 291; Fungi - 188; Plants - 123; Viruses - 0; Other Eukaryotes - 1660 [...] (957 aa)
     
  0.977
Bra013383
AT4G20340 (E=2e-116) | RNA polymerase II transcription factor/ transcription initiation factor (454 aa)
     
  0.976
Bra036214
AT3G29380 (E=7e-111) | transcription factor IIB (TFIIB) family protein (327 aa)
     
  0.975
Bra033101
AT3G29380 (E=3e-092) | transcription factor IIB (TFIIB) family protein (329 aa)
     
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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