STRINGSTRING
Bra008209 protein (Brassica rapa) - STRING interaction network
"Bra008209" - AT1G75590 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008209AT1G75590 (E=1e-061) | auxin-responsive family protein (151 aa)    
Predicted Functional Partners:
Bra002216
AT5G19140 (E=5e-124) ATAILP1, AILP1 | AILP1 (236 aa)
           
  0.503
Bra018637
AT1G08300 (E=2e-223) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; BEST Arabidopsis thaliana protein match is- ATP binding (TAIR-AT4G13750.1); Has 55 Blast hits to 51 proteins in 25 species- Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 18 (source- NCBI BLink). (694 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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