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Bra008212 protein (Brassica rapa) - STRING interaction network
"Bra008212" - AT1G75660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008212AT1G75660 (E=0.0) XRN3 | XRN3; 5’-3’ exoribonuclease (1049 aa)    
Predicted Functional Partners:
Bra031623
AT1G08340 (E=5e-106) | rac GTPase activating protein, putative (649 aa)
     
  0.975
Bra030721
AT1G08370 (E=5e-125) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (367 aa)
     
  0.975
Bra018630
AT1G08370 (E=1e-143) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (362 aa)
     
  0.975
Bra025583
AT5G13570 (E=6e-113) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (291 aa)
       
  0.968
Bra025582
AT5G13570 (E=7e-085) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (289 aa)
       
  0.968
Bra023421
AT5G13570 (E=1e-142) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (325 aa)
       
  0.968
Bra008818
AT5G13570 (E=1e-147) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (316 aa)
       
  0.968
Bra029857
AT3G10620 (E=6e-093) ATNUDX26 | ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (336 aa)
     
  0.954
Bra040170
AT4G17620 (E=8e-209) | glycine-rich protein (541 aa)
     
 
  0.951
Bra012653
AT4G17620 (E=9e-215) | glycine-rich protein (541 aa)
     
 
  0.951
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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