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Bra008214 protein (Brassica rapa) - STRING interaction network
"Bra008214" - AT1G75680 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
Bra008214AT1G75680 (E=6e-243) AtGH9B7 | AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (526 aa)    
Predicted Functional Partners:
Bra013302
AT5G46190 (E=4e-109) | KH domain-containing protein (586 aa)
           
  0.527
Bra036427
AT3G03920 (E=2e-050) | Gar1 RNA-binding region family protein (203 aa)
           
  0.504
Bra006443
AT3G03920 (E=2e-050) | Gar1 RNA-binding region family protein (199 aa)
           
  0.504
Bra023952
AT4G32410 (E=0.0) CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups (1083 aa)
     
 
  0.488
Bra011345
AT4G32410 (E=0.0) CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups (1080 aa)
     
 
  0.488
Bra025803
AT1G20230 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (760 aa)
           
  0.483
Bra038957
AT5G37310 (E=0.0) | LOCATED IN- integral to membrane, Golgi apparatus, plant-type cell wall; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nonaspanin (TM9SF) (InterPro-IPR004240); BEST Arabidopsis thaliana protein match is- endomembrane protein 70, putative (TAIR-AT1G14670.1); Has 1019 Blast hits to 986 proteins in 161 species- Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 148; Plants - 242; Viruses - 0; Other Eukaryotes - 185 (source- NCBI BLink). (592 aa)
           
  0.472
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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