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Bra008216 protein (Brassica rapa) - STRING interaction network
"Bra008216" - AT1G75690 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008216AT1G75690 (E=4e-070) | chaperone protein dnaJ-related (151 aa)    
Predicted Functional Partners:
Bra004077
AT1G67700 (E=9e-116) | unknown protein (227 aa)
     
 
  0.745
Bra039115
AT3G01480 (E=7e-188) CYP38 | CYP38 (cyclophilin 38); peptidyl-prolyl cis-trans isomerase (428 aa)
     
   
  0.617
Bra018954
AT1G52220 (E=4e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR-AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species- Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (145 aa)
     
        0.557
Bra021327
AT1G54780 (E=3e-122) | thylakoid lumen 18.3 kDa protein (284 aa)
     
   
  0.548
Bra036258
AT4G02530 (E=4e-074) | chloroplast thylakoid lumen protein (219 aa)
     
        0.537
Bra029759
AT5G02120 (E=3e-034) OHP | OHP (ONE HELIX PROTEIN) (117 aa)
     
        0.533
Bra005709
AT5G02120 (E=1e-040) OHP | OHP (ONE HELIX PROTEIN) (111 aa)
     
        0.533
Bra024187
AT4G28640 (E=2e-087) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (398 aa)
     
        0.531
Bra011047
AT4G28660 (E=4e-086) PSB28 | PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) (215 aa)
     
        0.531
Bra040520
AT3G01500 (E=2e-153) CA1 | CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (333 aa)
     
   
  0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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