STRINGSTRING
Bra008222 protein (Brassica rapa) - STRING interaction network
"Bra008222" - AT1G75750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008222AT1G75750 (E=4e-040) GASA1 | GASA1 (GAST1 PROTEIN HOMOLOG 1) (98 aa)    
Predicted Functional Partners:
Bra007056
AT3G54220 (E=2e-180) SCR, SGR1 | SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (316 aa)
       
      0.617
Bra025456
AT5G41920 (E=1e-117) | scarecrow transcription factor family protein (246 aa)
       
      0.597
Bra031427
AT1G61520 (E=1e-138) LHCA3 | LHCA3; chlorophyll binding (273 aa)
           
  0.410
Bra027083
AT1G61520 (E=5e-132) LHCA3 | LHCA3; chlorophyll binding (271 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]