STRINGSTRING
Bra008226 protein (Brassica rapa) - STRING interaction network
"Bra008226" - AT2G26020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008226AT2G26020 (E=4e-033) PDF1.2b | PDF1.2b (plant defensin 1.2b) (80 aa)    
Predicted Functional Partners:
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
           
  0.520
Bra005000
AT2G39940 (E=2e-311) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (603 aa)
           
  0.518
Bra000156
AT2G39940 (E=4e-307) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (590 aa)
           
  0.518
Bra001123
AT3G04720 (E=2e-097) PR4, HEL, PR-4 | PR4 (PATHOGENESIS-RELATED 4); chitin binding (214 aa)
     
   
  0.499
Bra034754
AT3G12500 (E=1e-172) ATHCHIB, PR3, PR-3, CHI-B, B-CHI | ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase (323 aa)
           
  0.497
Bra032433
AT1G06160 (E=1e-074) ORA59 | ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59); DNA binding / transcription activator/ transcription factor (228 aa)
           
  0.483
Bra015478
AT1G06160 (E=4e-064) ORA59 | ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59); DNA binding / transcription activator/ transcription factor (236 aa)
           
  0.483
Bra039284
AT2G46370 (E=1e-298) JAR1, FIN219 | JAR1 (JASMONATE RESISTANT 1); ATP binding / adenylyltransferase/ catalytic/ jasmonate-amino synthetase (573 aa)
           
  0.483
Bra038726
AT3G12500 (E=8e-144) ATHCHIB, PR3, PR-3, CHI-B, B-CHI | ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase (330 aa)
           
  0.483
Bra010178
AT1G32640 (E=5e-263) ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | MYC2; DNA binding / transcription activator/ transcription factor (600 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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