STRINGSTRING
Bra008229 protein (Brassica rapa) - STRING interaction network
"Bra008229" - AT1G75910 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008229AT1G75910 (E=1e-145) EXL4 | EXL4; acyltransferase/ carboxylesterase/ lipase (341 aa)    
Predicted Functional Partners:
Bra012848
AT3G51590 (E=4e-052) LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12); lipid binding ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (119 aa)
     
   
  0.430
Bra028343
AT3G23770 (E=1e-257) | glycosyl hydrolase family 17 protein (476 aa)
     
   
  0.416
Bra014979
AT3G23770 (E=6e-249) | glycosyl hydrolase family 17 protein (478 aa)
     
   
  0.416
Bra005943
AT5G07530 (E=1e-025) GRP17, ATGRP17, ATGRP-7 | GRP17 (GLYCINE RICH PROTEIN 17); lipid binding (266 aa)
     
   
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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