STRINGSTRING
Bra008233 protein (Brassica rapa) - STRING interaction network
"Bra008233" - AT1G75980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008233AT1G75980 (E=2e-022) | FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Single hybrid motif (InterPro-IPR011053); Has 156 Blast hits to 156 proteins in 78 species- Archae - 4; Bacteria - 4; Metazoa - 109; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 27 (source- NCBI BLink). (73 aa)    
Predicted Functional Partners:
Bra025817
AT1G20410 (E=3e-232) | unknown protein (502 aa)
     
      0.910
Bra012228
AT1G20410 (E=6e-218) | unknown protein (508 aa)
     
      0.910
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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