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Bra008235 protein (Brassica rapa) - STRING interaction network
"Bra008235" - AT1G76020 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008235AT1G76020 (E=5e-093) | INVOLVED IN- biological_process unknown; LOCATED IN- cell wall, vacuole; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Thioredoxin-like fold (InterPro-IPR012336); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G20225.1); Has 118 Blast hits to 116 proteins in 37 species- Archae - 0; Bacteria - 51; Metazoa - 12; Fungi - 4; Plants - 28; Viruses - 0; Other Eukaryotes - 23 (source- NCBI BLink). (227 aa)    
Predicted Functional Partners:
Bra004751
AT2G43190 (E=6e-100) | ribonuclease P family protein (299 aa)
       
  0.885
Bra015337
AT1G04640 (E=6e-121) LIP2 | LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase (378 aa)
       
  0.878
Bra020272
AT5G59980 (E=9e-190) | RNase P subunit p30 family protein (749 aa)
       
  0.850
Bra002517
AT5G59980 (E=4e-155) | RNase P subunit p30 family protein (627 aa)
       
  0.850
Bra032762
AT2G47300 (E=0.0) | ribonuclease P (807 aa)
     
    0.813
Bra029464
AT4G22380 (E=2e-036) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (96 aa)
     
  0.801
Bra018487
AT5G20160 (E=3e-053) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (128 aa)
     
  0.801
Bra000781
AT5G20160 (E=5e-054) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (128 aa)
     
  0.801
Bra006544
AT5G20160 (E=7e-025) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (102 aa)
     
  0.801
Bra000916
AT4G01790 (E=4e-051) | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-related (148 aa)
     
  0.801
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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