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Bra008242 protein (Brassica rapa) - STRING interaction network
"Bra008242" - AT1G76180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008242AT1G76180 (E=7e-012) ERD14 | ERD14 (EARLY RESPONSE TO DEHYDRATION 14); calcium ion binding (194 aa)    
Predicted Functional Partners:
Bra016924
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (863 aa)
       
      0.614
Bra007321
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (862 aa)
       
      0.501
Bra027150
AT1G60550 (E=3e-174) ECHID, DHNS | ECHID (ENOYL-COA HYDRATASE/ISOMERASE D); catalytic/ naphthoate synthase (338 aa)
           
  0.455
Bra030494
AT1G01470 (E=4e-076) LEA14, LSR3 | LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (151 aa)
     
   
  0.423
Bra020718.1-P
AT5G57030 (E=8e-225) LUT2 | LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase (476 aa)
           
  0.404
Bra006838
AT5G57030 (E=1e-253) LUT2 | LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase (532 aa)
           
  0.404
Bra002769
AT5G57030 (E=3e-255) LUT2 | LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase (530 aa)
           
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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