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Bra008259 protein (Brassica rapa) - STRING interaction network
"Bra008259" - AT1G76420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008259AT1G76420 (E=2e-127) CUC3, NAC368, ANAC031 | CUC3 (CUP SHAPED COTYLEDON3); transcription factor (320 aa)    
Predicted Functional Partners:
Bra027050
AT1G62360 (E=9e-163) STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor (382 aa)
           
  0.501
Bra038002
AT1G55580 (E=3e-180) LAS, SCL18 | LAS (Lateral Suppressor); transcription factor (443 aa)
           
  0.451
Bra016285
AT1G26780 (E=2e-149) MYB117, AtMYB117 | myb family transcription factor (MYB117) (353 aa)
     
   
  0.414
Bra015983
AT1G73590 (E=1e-313) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (618 aa)
           
  0.410
Bra008105
AT1G73590 (E=0.0) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (616 aa)
           
  0.410
Bra000638
AT4G08150 (E=9e-163) KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (387 aa)
           
  0.410
Bra001586
AT3G15170 (E=6e-124) CUC1, anac054, ATNAC1 | CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (309 aa)
     
 
0.409
Bra007920
AT1G70510 (E=5e-127) KNAT2, ATK1 | KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor (327 aa)
     
   
  0.406
Bra038606
AT5G63090 (E=1e-090) LOB | LOB (LATERAL ORGAN BOUNDARIES) (181 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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