STRINGSTRING
Bra008272 protein (Brassica rapa) - STRING interaction network
"Bra008272" - AT4G30620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008272AT4G30620 (E=2e-027) | unknown protein (261 aa)    
Predicted Functional Partners:
Bra018954
AT1G52220 (E=4e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR-AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species- Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (145 aa)
   
          0.509
Bra009194
AT5G06430 (E=1e-068) | thioredoxin-related (191 aa)
   
          0.488
Bra004459
AT2G47400 (E=4e-057) CP12-1, CP12 | CP12-1 (127 aa)
   
          0.459
Bra008533
AT4G01150 (E=1e-063) | unknown protein (169 aa)
   
          0.455
Bra009502
AT5G03900 (E=4e-045) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 104 Blast hits to 104 proteins in 40 species- Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (97 aa)
   
          0.453
Bra000947
AT4G01150 (E=5e-068) | unknown protein (164 aa)
   
          0.450
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
          0.448
Bra031662
AT1G09340 (E=6e-061) CRB, CSP41B | CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding (149 aa)
   
          0.446
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
          0.430
Bra000588
AT2G20920 (E=6e-102) | unknown protein (285 aa)
   
          0.428
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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